HL_6ZVJ_019

3D structure

PDB id

6ZVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human ABCE1-bound 43S pre-initiation complex - State II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVJ_019 not in the Motif Atlas

Homologous match to HL_4V88_206

Geometric discrepancy: 0.3319

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

6ZVJ|1|2|A|957
6ZVJ|1|2|G|958
6ZVJ|1|2|G|959
6ZVJ|1|2|U|960
6ZVJ|1|2|G|961
6ZVJ|1|2|A|962
6ZVJ|1|2|A|963
6ZVJ|1|2|A|964
6ZVJ|1|2|U|965
6ZVJ|1|2|U|966

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain i

40S ribosomal protein S14