HL_6ZVK_005

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

6ZVK|1|K3|U|160, 6ZVK|1|K3|U|161

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVK_005 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.3632

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6ZVK|1|K3|G|156
6ZVK|1|K3|U|157
6ZVK|1|K3|A|158
6ZVK|1|K3|A|159
6ZVK|1|K3|U|160
6ZVK|1|K3|U|161
6ZVK|1|K3|C|162

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain I5

40S ribosomal protein S24

Chain b3

40S ribosomal protein S6