HL_6ZVK_006

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CUUCGCGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVK_006 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3283

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6ZVK|1|K3|C|196
6ZVK|1|K3|U|197
6ZVK|1|K3|U|198
6ZVK|1|K3|C|199
6ZVK|1|K3|G|200
6ZVK|1|K3|C|201
6ZVK|1|K3|G|202
6ZVK|1|K3|G|203

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain c3

40S ribosomal protein S8