HL_6ZVK_012
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 6ZVK|1|K3|C|450, 6ZVK|1|K3|G|451
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZVK_012 not in the Motif Atlas
- Homologous match to HL_4V88_195
- Geometric discrepancy: 0.1561
- The information below is about HL_4V88_195
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6ZVK|1|K3|C|441
6ZVK|1|K3|C|442
6ZVK|1|K3|U|443
6ZVK|1|K3|G|444
6ZVK|1|K3|A|445
6ZVK|1|K3|G|446
6ZVK|1|K3|A|447
6ZVK|1|K3|A|448
6ZVK|1|K3|A|449
6ZVK|1|K3|C|450
6ZVK|1|K3|G|451
6ZVK|1|K3|G|452
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain I5
- 40S ribosomal protein S24
- Chain b3
- 40S ribosomal protein S6
- Chain c3
- 40S ribosomal protein S8
- Chain j3
- 40S ribosomal protein S4
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