HL_6ZVK_017

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVK_017 not in the Motif Atlas

Homologous match to HL_4V88_200

Geometric discrepancy: 0.1297

The information below is about HL_4V88_200

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6ZVK|1|K3|C|618
6ZVK|1|K3|A|619
6ZVK|1|K3|G|620
6ZVK|1|K3|C|621
6ZVK|1|K3|C|622
6ZVK|1|K3|G|623

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain E1

INTERNAL RIBOSOME ENTRY SITE

Chain T3

Ribosomal protein S23