HL_6ZVK_021

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CCCGAGCCG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVK_021 not in the Motif Atlas

Geometric match to HL_8H9D_001

Geometric discrepancy: 0.2491

The information below is about HL_8H9D_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.1

Basepair signature

cWW-F

Number of instances in this motif group

8

Unit IDs

6ZVK|1|K3|C|833
6ZVK|1|K3|C|834
6ZVK|1|K3|C|835
6ZVK|1|K3|G|836
6ZVK|1|K3|A|837
6ZVK|1|K3|G|838
6ZVK|1|K3|C|839
6ZVK|1|K3|C|840
6ZVK|1|K3|G|841

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain I5

40S ribosomal protein S24

Chain d3

Ribosomal protein S9 (Predicted)

Chain j3

40S ribosomal protein S4