HL_6ZVK_025
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- GAUCAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 6ZVK|1|K3|U|1061
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZVK_025 not in the Motif Atlas
- Homologous match to HL_4V88_208
- Geometric discrepancy: 0.1951
- The information below is about HL_4V88_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
6ZVK|1|K3|G|1054
6ZVK|1|K3|A|1055
6ZVK|1|K3|U|1056
6ZVK|1|K3|C|1057
6ZVK|1|K3|A|1058
6ZVK|1|K3|G|1059
6ZVK|1|K3|A|1060
6ZVK|1|K3|U|1061
6ZVK|1|K3|A|1062
6ZVK|1|K3|C|1063
6ZVK|1|K3|C|1064
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain E1
- INTERNAL RIBOSOME ENTRY SITE
- Chain O3
- 40S RIBOSOMAL PROTEIN ES26
- Chain a5
- 40S RIBOSOMAL PROTEIN US11
- Chain e2
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: