HL_6ZVK_036
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- AUUGCAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 6ZVK|1|K3|A|1623
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZVK_036 not in the Motif Atlas
- Homologous match to HL_4V88_219
- Geometric discrepancy: 0.2113
- The information below is about HL_4V88_219
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03273.1
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6ZVK|1|K3|A|1614
6ZVK|1|K3|U|1615
6ZVK|1|K3|U|1616
6ZVK|1|K3|G|1617
6ZVK|1|K3|C|1618
6ZVK|1|K3|A|1619
6ZVK|1|K3|A|1620
6ZVK|1|K3|U|1621
6ZVK|1|K3|U|1622
6ZVK|1|K3|A|1623
6ZVK|1|K3|U|1624
6ZVK|1|K3|U|1625
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain A3
- ribosomal protein uS19
- Chain G5
- ribosomal protein uS13
- Chain H3
- ribosomal protein uS14
- Chain H5
- 40S RIBOSOMAL PROTEIN ES19
Coloring options: