HL_6ZVK_045
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- CGCGGCG
- Length
- 7 nucleotides
- Bulged bases
- 6ZVK|1|e2|G|134, 6ZVK|1|e2|G|135
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZVK_045 not in the Motif Atlas
- Geometric match to HL_6D12_001
- Geometric discrepancy: 0.1671
- The information below is about HL_6D12_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89167.2
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 22
Unit IDs
6ZVK|1|e2|C|131
6ZVK|1|e2|G|132
6ZVK|1|e2|C|133
6ZVK|1|e2|G|134
6ZVK|1|e2|G|135
6ZVK|1|e2|C|136
6ZVK|1|e2|G|137
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain 12
- Ribosomal protein L15
- Chain A2
- uL29
- Chain C2
- Ribosomal protein L37
- Chain h2
- 5.8S ribosomal RNA; 5.8S rRNA
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