HL_6ZVK_047

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CGUGG

Length

5 nucleotides

Bulged bases

6ZVK|1|e2|U|224, 6ZVK|1|e2|G|225

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVK_047 not in the Motif Atlas

Homologous match to HL_5TBW_006

Geometric discrepancy: 0.1766

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6ZVK|1|e2|C|222
6ZVK|1|e2|G|223
6ZVK|1|e2|U|224
6ZVK|1|e2|G|225
6ZVK|1|e2|G|226

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain o2

Ribosomal protein L26

Chain t2

uL4