HL_6ZVK_048
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- GUGUGAGGC
- Length
- 9 nucleotides
- Bulged bases
- 6ZVK|1|e2|G|232
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZVK_048 not in the Motif Atlas
- Homologous match to HL_5TBW_007
- Geometric discrepancy: 0.1715
- The information below is about HL_5TBW_007
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_08002.12
- Basepair signature
- cWW-cWW-F-tWH
- Number of instances in this motif group
- 16
Unit IDs
6ZVK|1|e2|G|230
6ZVK|1|e2|U|231
6ZVK|1|e2|G|232
6ZVK|1|e2|U|233
6ZVK|1|e2|G|234
6ZVK|1|e2|A|235
6ZVK|1|e2|G|236
6ZVK|1|e2|G|237
6ZVK|1|e2|C|238
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain h2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain o2
- Ribosomal protein L26
- Chain t2
- uL4
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