HL_6ZVK_056

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GUCCCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVK_056 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3476

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

6ZVK|1|e2|G|1178
6ZVK|1|e2|U|1179
6ZVK|1|e2|C|1180
6ZVK|1|e2|C|1181
6ZVK|1|e2|C|1182
6ZVK|1|e2|C|1183

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain G2

60S ribosomal protein L5

Chain X2

Ribosomal protein L10 (Predicted)