HL_6ZVK_058

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

6ZVK|1|e2|C|1325

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVK_058 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.1419

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6ZVK|1|e2|U|1317
6ZVK|1|e2|C|1318
6ZVK|1|e2|U|1319
6ZVK|1|e2|U|1320
6ZVK|1|e2|G|1321
6ZVK|1|e2|A|1322
6ZVK|1|e2|A|1323
6ZVK|1|e2|A|1324
6ZVK|1|e2|C|1325
6ZVK|1|e2|A|1326

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 52

uL3

Chain q2

uL15

Chain v2

eL32