HL_6ZVK_062

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CCUCUCCAGUCCG

Length

13 nucleotides

Bulged bases

6ZVK|1|e2|C|1439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVK_062 not in the Motif Atlas

Homologous match to HL_8GLP_020

Geometric discrepancy: 0.5567

The information below is about HL_8GLP_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20751.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6ZVK|1|e2|C|1436
6ZVK|1|e2|C|1437
6ZVK|1|e2|U|1438
6ZVK|1|e2|C|1439
6ZVK|1|e2|U|1440
6ZVK|1|e2|C|1441
6ZVK|1|e2|C|1442
6ZVK|1|e2|A|1443
6ZVK|1|e2|G|1444
6ZVK|1|e2|U|1445
6ZVK|1|e2|C|1446
6ZVK|1|e2|C|1447
6ZVK|1|e2|G|1448

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain S2

60S RIBOSOMAL PROTEIN EL18

Chain U2

uL30

Chain t2

uL4