HL_6ZVK_064

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVK_064 not in the Motif Atlas

Homologous match to HL_8C3A_019

Geometric discrepancy: 0.3131

The information below is about HL_8C3A_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6ZVK|1|e2|G|1561
6ZVK|1|e2|G|1562
6ZVK|1|e2|A|1563
6ZVK|1|e2|A|1564
6ZVK|1|e2|A|1565
6ZVK|1|e2|C|1566

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain F3

ribosomal protein uS15

Chain G3

Ribosomal protein S11

Chain I2

ribosomal protein eL43

Chain K3

Small subunit ribosomal RNA; SSU rRNA