HL_6ZVK_067

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

6ZVK|1|e2|C|1676, 6ZVK|1|e2|A|1679

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVK_067 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.2062

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6ZVK|1|e2|C|1675
6ZVK|1|e2|C|1676
6ZVK|1|e2|U|1677
6ZVK|1|e2|C|1678
6ZVK|1|e2|A|1679
6ZVK|1|e2|G|1680

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain F2

eL42

Chain q2

uL15

Chain r2

60S ribosomal protein L29