HL_6ZVK_072
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- GGAUGAAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZVK_072 not in the Motif Atlas
- Homologous match to HL_5TBW_026
- Geometric discrepancy: 0.1536
- The information below is about HL_5TBW_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_44398.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
6ZVK|1|e2|G|1885
6ZVK|1|e2|G|1886
6ZVK|1|e2|A|1887
6ZVK|1|e2|U|1888
6ZVK|1|e2|G|1889
6ZVK|1|e2|A|1890
6ZVK|1|e2|A|1891
6ZVK|1|e2|C|1892
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain U2
- uL30
- Chain d2
- 5S ribosomal RNA; 5S rRNA
- Chain v2
- eL32
- Chain x2
- eL33
Coloring options: