HL_6ZVK_099

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

6ZVK|1|e2|A|3876, 6ZVK|1|e2|A|3877, 6ZVK|1|e2|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVK_099 not in the Motif Atlas

Homologous match to HL_5TBW_051

Geometric discrepancy: 0.1386

The information below is about HL_5TBW_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

6ZVK|1|e2|G|3873
6ZVK|1|e2|G|3874
6ZVK|1|e2|G|3875
6ZVK|1|e2|A|3876
6ZVK|1|e2|A|3877
6ZVK|1|e2|C|3878
6ZVK|1|e2|G|3879
6ZVK|1|e2|G|3880
6ZVK|1|e2|G|3881
6ZVK|1|e2|C|3882

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 52

uL3

Chain v2

eL32