HL_6ZVK_107
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- UUCAGUACG
- Length
- 9 nucleotides
- Bulged bases
- 6ZVK|1|e2|C|4303
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZVK_107 not in the Motif Atlas
- Geometric match to HL_4LX6_002
- Geometric discrepancy: 0.3486
- The information below is about HL_4LX6_002
- Detailed Annotation
- Purine riboswitch
- Broad Annotation
- Purine riboswitch
- Motif group
- HL_31585.4
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 20
Unit IDs
6ZVK|1|e2|U|4301
6ZVK|1|e2|U|4302
6ZVK|1|e2|C|4303
6ZVK|1|e2|A|4304
6ZVK|1|e2|G|4305
6ZVK|1|e2|U|4306
6ZVK|1|e2|A|4307
6ZVK|1|e2|C|4308
6ZVK|1|e2|G|4309
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain 72
- eL21
- Chain F2
- eL42
- Chain S2
- 60S RIBOSOMAL PROTEIN EL18
- Chain q2
- uL15
- Chain r2
- 60S ribosomal protein L29
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