HL_6ZVK_114

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVK_114 not in the Motif Atlas

Geometric match to HL_3OXE_002

Geometric discrepancy: 0.1672

The information below is about HL_3OXE_002

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

6ZVK|1|e2|C|4603
6ZVK|1|e2|G|4604
6ZVK|1|e2|A|4605
6ZVK|1|e2|G|4606
6ZVK|1|e2|A|4607
6ZVK|1|e2|G|4608

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain E2

60S RIBOSOMAL PROTEIN EL40

Chain W2

60S RIBOSOMAL PROTEIN UL6