HL_6ZVK_118

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GGAGAGGC

Length

8 nucleotides

Bulged bases

6ZVK|1|e2|G|4910, 6ZVK|1|e2|A|4911

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVK_118 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.1404

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6ZVK|1|e2|G|4907
6ZVK|1|e2|G|4908
6ZVK|1|e2|A|4909
6ZVK|1|e2|G|4910
6ZVK|1|e2|A|4911
6ZVK|1|e2|G|4912
6ZVK|1|e2|G|4913
6ZVK|1|e2|C|4914

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 52

uL3

Chain w2

60S RIBOSOMAL PROTEIN UL13