HL_6ZVK_120

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

6ZVK|1|e2|C|5027

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVK_120 not in the Motif Atlas

Geometric match to HL_7KI3_001

Geometric discrepancy: 0.1209

The information below is about HL_7KI3_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6ZVK|1|e2|C|5021
6ZVK|1|e2|U|5022
6ZVK|1|e2|C|5023
6ZVK|1|e2|C|5024
6ZVK|1|e2|C|5025
6ZVK|1|e2|U|5026
6ZVK|1|e2|C|5027
6ZVK|1|e2|G|5028

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain c3

40S ribosomal protein S8