HL_6ZVK_121
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- CAGCUAGCUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZVK_121 not in the Motif Atlas
- Geometric match to HL_4V9F_001
- Geometric discrepancy: 0.2329
- The information below is about HL_4V9F_001
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_93438.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
6ZVK|1|h2|C|47
6ZVK|1|h2|A|48
6ZVK|1|h2|G|49
6ZVK|1|h2|C|50
6ZVK|1|h2|U|51
6ZVK|1|h2|A|52
6ZVK|1|h2|G|53
6ZVK|1|h2|C|54
6ZVK|1|h2|U|55
6ZVK|1|h2|G|56
Current chains
- Chain h2
- 5.8S RIBOSOMAL RNA
Nearby chains
- Chain A2
- uL29
- Chain C2
- Ribosomal protein L37
- Chain D2
- ribosomal protein eL39
- Chain e2
- Large subunit ribosomal RNA; LSU rRNA
- Chain m2
- 60S RIBOSOMAL PROTEIN UL23
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