HL_6ZXD_018

3D structure

PDB id

6ZXD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State F1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZXD_018 not in the Motif Atlas

Homologous match to HL_4V88_206

Geometric discrepancy: 0.1557

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

6ZXD|1|2|A|957
6ZXD|1|2|G|958
6ZXD|1|2|G|959
6ZXD|1|2|U|960
6ZXD|1|2|G|961
6ZXD|1|2|A|962
6ZXD|1|2|A|963
6ZXD|1|2|A|964
6ZXD|1|2|U|965
6ZXD|1|2|U|966

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain O

40S ribosomal protein S14

Chain x

RNA-binding protein PNO1