HL_6ZXD_029

3D structure

PDB id

6ZXD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State F1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

6ZXD|1|2|U|1462

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZXD_029 not in the Motif Atlas

Geometric match to HL_1F1T_001

Geometric discrepancy: 0.3505

The information below is about HL_1F1T_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59843.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6ZXD|1|2|C|1460
6ZXD|1|2|G|1461
6ZXD|1|2|U|1462
6ZXD|1|2|U|1463
6ZXD|1|2|C|1464
6ZXD|1|2|A|1465
6ZXD|1|2|G|1466

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain R

40S ribosomal protein S17

Chain c

40S ribosomal protein S28

Chain y

RNA-binding protein NOB1