HL_6ZXE_025

3D structure

PDB id

6ZXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State F2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

ACAGAUUGAUAGCUCUUU

Length

18 nucleotides

Bulged bases

6ZXE|1|2|U|1300

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZXE|1|2|A|1291
6ZXE|1|2|C|1292
6ZXE|1|2|A|1293
6ZXE|1|2|G|1294
6ZXE|1|2|A|1295
6ZXE|1|2|U|1296
6ZXE|1|2|U|1297
6ZXE|1|2|G|1298
6ZXE|1|2|A|1299
6ZXE|1|2|U|1300
6ZXE|1|2|A|1301
6ZXE|1|2|G|1302
6ZXE|1|2|C|1303
6ZXE|1|2|U|1304
6ZXE|1|2|C|1305
6ZXE|1|2|U|1306
6ZXE|1|2|U|1307
6ZXE|1|2|U|1308

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain P

40S ribosomal protein S15

Chain d

40S ribosomal protein S29

Chain f

Ubiquitin-40S ribosomal protein S27a