RNA 3D Hub //

6ZXE Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6ZXE_0011/2/7:17No text annotation
homologous
HL_4V88_186
NA
HL_6ZXE_0021/2/69:80No text annotation
HL_6ZXE_0031/2/156:162GNRA related
homologous
HL_4V88_188
NA
HL_6ZXE_0051/2/288:295T-loop with 1 bulged base
homologous
HL_4V88_191
NA
HL_6ZXE_0071/2/377:387No text annotation
HL_6ZXE_0081/2/416:421No text annotation
homologous
HL_4V88_194
NA
HL_6ZXE_0091/2/441:452No text annotation
homologous
HL_4V88_195
NA
HL_6ZXE_0101/2/462:467UNCG
homologous
HL_4V88_196
NA
HL_6ZXE_0111/2/498:504No text annotation
homologous
HL_4V88_197
NA
HL_6ZXE_0131/2/569:581No text annotation
homologous
HL_4V88_199
NA
HL_6ZXE_0141/2/618:623GNRA variation
homologous
HL_4V88_200
NA
HL_6ZXE_0151/2/820:828No text annotation
homologous
HL_4V88_203
NA
HL_6ZXE_0181/2/957:966No text annotation
homologous
HL_4V88_206
NA
HL_6ZXE_0191/2/994:999GNRA
homologous
HL_4V88_207
NA
HL_6ZXE_0211/2/1113:1120No text annotation
HL_6ZXE_0221/2/1141:1146GNRA
homologous
HL_4V88_210
NA
HL_6ZXE_0231/2/1178:1183GNRA
homologous
HL_4V88_211
NA
HL_6ZXE_0241/2/1245:1254No text annotation
homologous
HL_4V88_212
NA
HL_6ZXE_0261/2/1353:1358GNRA
homologous
HL_4V88_214
NA
HL_6ZXE_0271/2/1366:1373No text annotation
homologous
HL_4V88_215
NA
HL_6ZXE_0281/2/1460:1466No text annotation
geometric
HL_1F1T_001
NA
HL_6ZXE_0361/2/1614:1625No text annotation
homologous
HL_8CRE_223
HL_50951.1
HL_6ZXE_0311/2/1658:1666No text annotation
homologous
HL_4V88_220
NA

Problematic loops

#loop idProblemSequence
HL_6ZXE_034No text annotation
HL_6ZXE_004Mini UNCG
HL_6ZXE_006No text annotation
HL_6ZXE_012GNRA
HL_6ZXE_016Externally structured
HL_6ZXE_017No text annotation
HL_6ZXE_020No text annotation
HL_6ZXE_025No text annotation
HL_6ZXE_029GNRA
HL_6ZXE_030No text annotation
HL_6ZXE_035No text annotation
HL_6ZXE_032No text annotation
HL_6ZXE_033No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6ZXE_0011/2/23:25,
1/2/649:651		Isolated non-canonical cWW pair
geometric
IL_1Z7F_002
NA
IL_6ZXE_0021/2/34:36,
1/2/519:521		Isolated non-canonical cWW pair
homologous
IL_4V88_385
NA
IL_6ZXE_0031/2/37:40,
1/2/514:518		Double sheared
geometric
IL_4WF9_016
IL_58355.2
IL_6ZXE_0041/2/41:47,
1/2/479:481		No text annotation
homologous
IL_4V88_387
NA
IL_6ZXE_0051/2/49:51,
1/2/476:477		Minor groove platform
homologous
IL_4V88_388
NA
IL_6ZXE_0061/2/57:62,
1/2/86:88		No text annotation
homologous
IL_4V88_389
NA
IL_6ZXE_0071/2/63:68,
1/2/81:85		No text annotation
homologous
IL_4V88_390
NA
IL_6ZXE_0081/2/108:110,
1/2/351:353		Isolated non-canonical cWW pair
geometric
IL_1ZX7_004
NA
IL_6ZXE_0091/2/110:112,
1/2/349:351		Isolated non-canonical cWW pair
geometric
IL_4WF9_042
IL_01003.3
IL_6ZXE_0101/2/112:115,
1/2/348:349		Multiple bulged bases
homologous
IL_4V88_392
NA
IL_6ZXE_0111/2/116:121,
1/2/343:347		No text annotation
homologous
IL_4V88_393
NA
IL_6ZXE_0121/2/123:124,
1/2/339:341		Minor groove platform
geometric
IL_4UYK_001
IL_34520.3
IL_6ZXE_0141/2/145:151,
1/2/167:174		tWH-tWH-tHW-tHW
homologous
IL_4V88_394
NA
IL_6ZXE_0151/2/152:154,
1/2/164:166		Isolated cWH basepair
geometric
IL_3CZW_001
IL_10892.2
IL_6ZXE_0161/2/188:192,
1/2/207:211		Double sheared with non-canonical cWW
geometric
IL_4WFL_001
IL_87767.2
IL_6ZXE_0171/2/216:219,
1/2/302:309		Tandem non-canonical cWW pairs
geometric
IL_1GID_008
NA
IL_6ZXE_0191/2/312:314,
1/2/336:337		Single bulged A
homologous
IL_4V88_399
NA
IL_6ZXE_0201/2/317:319,
1/2/332:333		Single stack bend
geometric
IL_5TBW_009
NA
IL_6ZXE_0211/2/359:364,
1/2/396:403		Kink-turn with non-sequential stacking
homologous
IL_4V88_402
NA
IL_6ZXE_0221/2/366:371,
1/2/393:394		No text annotation
geometric
IL_5Y58_001
IL_37738.1
IL_6ZXE_0231/2/411:413,
1/2/424:429		No text annotation
homologous
IL_4V88_404
NA
IL_6ZXE_0241/2/437:439,
1/2/454:456		Isolated cWH basepair
homologous
IL_4V88_405
NA
IL_6ZXE_0251/2/459:461,
1/2/468:470		Isolated near basepair
homologous
IL_4V88_406
NA
IL_6ZXE_0261/2/487:489,
1/2/511:512		Single bulged U
homologous
IL_4V88_407
NA
IL_6ZXE_0271/2/491:495,
1/2/508:509		C-loop
geometric
IL_5J7L_018
NA
IL_6ZXE_0281/2/495:496,
1/2/506:508		Single bulged G
geometric
IL_5J7L_019
NA
IL_6ZXE_0291/2/529:530,
1/2/554:556		Single bulged A
geometric
IL_8P9A_252
IL_14190.2
IL_6ZXE_0901/2/532:534,
1/2/549:552		No text annotation
homologous
IL_8C3A_419
NA
IL_6ZXE_0311/2/535:537,
1/2/546:548		Stack and bulge
geometric
IL_2ET8_001
IL_53541.1
IL_6ZXE_0321/2/563:565,
1/2/585:592		No text annotation
IL_6ZXE_0331/2/566:569,
1/2/581:584		Double sheared
geometric
IL_5AOX_003
IL_58355.2
IL_6ZXE_0341/2/599:606,
1/2/636:637		SSU/LSU pseudoknot
geometric
IL_4V88_413
NA
IL_6ZXE_0351/2/606:608,
1/2/635:636		Single bulged U
homologous
IL_4V88_414
NA
IL_6ZXE_0361/2/611:617,
1/2/624:632		Kink-turn related
homologous
IL_8C3A_425
NA
IL_6ZXE_0371/2/663:665,
1/2/1162:1164		Isolated non-canonical cWW pair
geometric
IL_1Y27_001
IL_01003.3
IL_6ZXE_0381/2/665:671,
1/2/1161:1162		No text annotation
geometric
IL_4LFB_022
IL_20847.1
IL_6ZXE_0391/2/673:675,
1/2/1030:1032		Isolated non-canonical cWW pair
homologous
IL_4V88_417
NA
IL_6ZXE_0401/2/676:680,
1/2/1025:1029		tSH-tHW-tHS
homologous
IL_4V88_418
NA
IL_6ZXE_0421/2/802:803,
1/2/860:863		Major groove minor groove platform; mini C-loop
homologous
IL_4V88_423
NA
IL_6ZXE_0431/2/805:807,
1/2/856:858		Isolated non-canonical cWW pair
homologous
IL_4V88_424
NA
IL_6ZXE_0441/2/807:815,
1/2/849:856		No text annotation
homologous
IL_4V88_425
NA
IL_6ZXE_0451/2/874:876,
1/2/910:912		Isolated non-canonical cWW pair
geometric
IL_5TBW_016
NA
IL_6ZXE_0461/2/877:879,
1/2/907:909		Isolated non-canonical cWW pair
geometric
IL_5TBW_042
NA
IL_6ZXE_0471/2/922:923,
1/2/1019:1022		Major groove platform; stack outside cWW
homologous
IL_4V88_428
NA
IL_6ZXE_0911/2/925:927,
1/2/1014:1017		Isolated cWH basepair
homologous
IL_8C3A_510
NA
IL_6ZXE_0491/2/928:931,
1/2/1010:1013		Tandem non-canonical cWW pairs
geometric
IL_4V88_430
NA
IL_6ZXE_0501/2/931:935,
1/2/1007:1010		Tandem non-canonical cWW pairs
homologous
IL_4V88_431
NA
IL_6ZXE_0511/2/942:945,
1/2/981:984		Tandem non-canonical cWW pairs
homologous
IL_4V88_432
NA
IL_6ZXE_0521/2/952:956,
1/2/967:974		Kink-turn
homologous
IL_4V88_434
NA
IL_6ZXE_0531/2/1042:1047,
1/2/1071:1073		Other IL
homologous
IL_4V88_435
NA
IL_6ZXE_0541/2/1047:1051,
1/2/1067:1071		tSH-tHW-tHS
geometric
IL_5J7L_037
NA
IL_6ZXE_0551/2/1091:1093,
1/2/1152:1158		No text annotation
homologous
IL_4V88_437
NA
IL_6ZXE_0561/2/1098:1101,
1/2/1131:1134		Tandem non-canonical cWW pairs
geometric
IL_4V88_438
NA
IL_6ZXE_0571/2/1101:1103,
1/2/1129:1131		Isolated non-canonical cWW pair
geometric
IL_4V88_465
NA
IL_6ZXE_0581/2/1108:1110,
1/2/1123:1124		Single stack bend
geometric
IL_7RQB_058
NA
IL_6ZXE_0591/2/1168:1175,
1/2/1186:1191		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4V88_440
NA
IL_6ZXE_0601/2/1206:1208,
1/2/1691:1692		No text annotation
IL_6ZXE_0611/2/1230:1232,
1/2/1526:1528		Isolated non-canonical cWW pair
homologous
IL_4V88_444
NA
IL_6ZXE_0621/2/1235:1236,
1/2/1521:1523		Minor groove platform
homologous
IL_4V88_445
NA
IL_6ZXE_0661/2/1325:1327,
1/2/1502:1503		Single bulged U
homologous
IL_4V88_449
NA
IL_6ZXE_0671/2/1329:1333,
1/2/1498:1500		Isolated cWS basepair
geometric
IL_4V88_450
NA
IL_6ZXE_0931/2/1329:1335,
1/2/1492:1500		No text annotation
homologous
IL_8P9A_439
IL_99893.1
IL_6ZXE_0681/2/1333:1335,
1/2/1492:1498		Minor groove platform with extra cWW
homologous
IL_4V88_451
NA
IL_6ZXE_0691/2/1337:1338,
1/2/1488:1490		Single bulged A
homologous
IL_4V88_452
NA
IL_6ZXE_0701/2/1347:1349,
1/2/1380:1382		Isolated cWH basepair
homologous
IL_4V88_453
NA
IL_6ZXE_0711/2/1363:1365,
1/2/1374:1375		Minor groove platform
homologous
IL_4V88_454
NA
IL_6ZXE_0721/2/1395:1399,
1/2/1447:1450		Tandem non-canonical cWW pairs
geometric
IL_5EW4_002
IL_15225.2
IL_6ZXE_0731/2/1402:1405,
1/2/1441:1444		Minor groove platform
homologous
IL_4V88_456
NA
IL_6ZXE_0941/2/1541:1558,
1/2/1577:1592		No text annotation
IL_6ZXE_0761/2/1550:1558,
1/2/1577:1582		No text annotation
IL_6ZXE_0771/2/1560:1562,
1/2/1573:1575		Isolated non-canonical cWW pair
geometric
IL_4P3U_012
IL_71625.3
IL_6ZXE_0841/2/1729:1731,
1/2/1803:1805		Isolated non-canonical cWW pair
homologous
IL_4V88_470
NA
IL_6ZXE_0851/2/1733:1736,
1/2/1798:1801		Double sheared
homologous
IL_4V88_471
NA
IL_6ZXE_0861/2/1739:1741,
1/2/1793:1795		Isolated non-canonical cWW pair
geometric
IL_4E48_002
IL_01003.3
IL_6ZXE_0871/2/1742:1746,
1/2/1788:1792		Triple sheared
homologous
IL_4V88_474
NA
IL_6ZXE_0881/2/1750:1751,
1/2/1782:1784		Single bulged C
geometric
IL_5TBW_002
NA

Problematic loops

#loop idProblemSequence
IL_6ZXE_013No text annotation
IL_6ZXE_018No text annotation
IL_6ZXE_030No text annotation
IL_6ZXE_041Single stack bend
IL_6ZXE_048Tandem non-canonical cWW pairs
IL_6ZXE_063No text annotation
IL_6ZXE_092No text annotation
IL_6ZXE_064No text annotation
IL_6ZXE_065No text annotation
IL_6ZXE_074Isolated cWH basepair
IL_6ZXE_075No text annotation
IL_6ZXE_095Tandem non-canonical cWW pairs
IL_6ZXE_078No text annotation
IL_6ZXE_079Isolated non-canonical cWW pair
IL_6ZXE_080No text annotation
IL_6ZXE_081Single stack bend
IL_6ZXE_082Isolated non-canonical cWW pair
IL_6ZXE_096No text annotation
IL_6ZXE_083No text annotation
IL_6ZXE_089Single stack bend

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6ZXE_0011/2/40:41,
1/2/481:487,
1/2/512:514		No text annotation
geometric
J3_4V88_078
NA
J3_6ZXE_0121/2/40:47,
1/2/479:487,
1/2/512:514		No text annotation
homologous
J3_8P9A_069
J3_63856.1
J3_6ZXE_0021/2/816:819,
1/2/829:831,
1/2/843:848		No text annotation
homologous
J3_4V88_032
NA
J3_6ZXE_0031/2/938:941,
1/2/985:993,
1/2/1000:1004		No text annotation
homologous
J3_4V88_033
NA
J3_6ZXE_0041/2/1094:1096,
1/2/1136:1140,
1/2/1147:1151		No text annotation
J3_6ZXE_0131/2/1214:1221,
1/2/1645:1651,
1/2/1673:1685		No text annotation
J3_6ZXE_0141/2/1237:1244,
1/2/1255:1266,
1/2/1516:1520		No text annotation
homologous
J3_8P9A_078
J3_88451.1
J3_6ZXE_0151/2/1270:1277,
1/2/1320:1324,
1/2/1504:1512		No text annotation
J3_6ZXE_0071/2/1273:1277,
1/2/1320:1324,
1/2/1504:1510		No text annotation
homologous
J3_8C3A_041
NA
J3_6ZXE_0081/2/1340:1345,
1/2/1384:1389,
1/2/1481:1486		No text annotation
homologous
J3_4V88_039
NA
J3_6ZXE_0091/2/1350:1351,
1/2/1360:1363,
1/2/1375:1379		No text annotation
homologous
J3_8C3A_085
NA
J3_6ZXE_0101/2/1391:1395,
1/2/1450:1456,
1/2/1470:1479		No text annotation
J4_6ZXE_0011/2/98:106,
1/2/355:357,
1/2/405:409,
1/2/431:432		No text annotation
homologous
J4_8C3A_021
NA
J4_6ZXE_0021/2/671:673,
1/2/1032:1037,
1/2/1078:1089,
1/2/1160:1161		No text annotation
homologous
J4_8P9A_022
J4_14595.1
J5_6ZXE_0011/2/30:34,
1/2/521:527,
1/2/558:563,
1/2/592:595,
1/2/641:644		No text annotation
homologous
J5_8C3A_018
NA
J5_6ZXE_0021/2/30:34,
1/2/521:527,
1/2/558:565,
1/2/585:595,
1/2/641:644		No text annotation
J5_6ZXE_0031/2/53:56,
1/2/89:96,
1/2/434:436,
1/2/457:459,
1/2/470:474		No text annotation
homologous
J5_8C3A_020
NA
J5_6ZXE_0041/2/125:129,
1/2/183:185,
1/2/214:215,
1/2/310:312,
1/2/337:338		No text annotation

Problematic loops

#loop idProblemSequence
J3_6ZXE_005No text annotation
J3_6ZXE_006No text annotation
J3_6ZXE_011No text annotation

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