HL_6ZXE_035

3D structure

PDB id

6ZXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State F2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAUUGCAAUUAUUC

Length

14 nucleotides

Bulged bases

6ZXE|1|2|U|1621, 6ZXE|1|2|U|1622, 6ZXE|1|2|A|1623

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZXE|1|2|G|1613
6ZXE|1|2|A|1614
6ZXE|1|2|U|1615
6ZXE|1|2|U|1616
6ZXE|1|2|G|1617
6ZXE|1|2|C|1618
6ZXE|1|2|A|1619
6ZXE|1|2|A|1620
6ZXE|1|2|U|1621
6ZXE|1|2|U|1622
6ZXE|1|2|A|1623
6ZXE|1|2|U|1624
6ZXE|1|2|U|1625
6ZXE|1|2|C|1626

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain P

40S ribosomal protein S15

Chain S

40S ribosomal protein S18

Chain T

40S ribosomal protein S19

Chain d

40S ribosomal protein S29