HL_6ZXF_011

3D structure

PDB id

6ZXF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUUCG

Length

6 nucleotides

Bulged bases

6ZXF|1|2|U|541

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZXF_011 not in the Motif Atlas

Homologous match to HL_4V88_198

Geometric discrepancy: 0.3039

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6ZXF|1|2|C|539
6ZXF|1|2|U|540
6ZXF|1|2|U|541
6ZXF|1|2|U|542
6ZXF|1|2|C|543
6ZXF|1|2|G|544

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains