HL_6ZXF_020

3D structure

PDB id

6ZXF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

6ZXF|1|2|C|1057, 6ZXF|1|2|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZXF_020 not in the Motif Atlas

Homologous match to HL_4V88_208

Geometric discrepancy: 0.5796

The information below is about HL_4V88_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

6ZXF|1|2|G|1054
6ZXF|1|2|A|1055
6ZXF|1|2|U|1056
6ZXF|1|2|C|1057
6ZXF|1|2|A|1058
6ZXF|1|2|G|1059
6ZXF|1|2|A|1060
6ZXF|1|2|U|1061
6ZXF|1|2|A|1062
6ZXF|1|2|C|1063
6ZXF|1|2|C|1064

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain O

40S ribosomal protein S14

Chain z

Serine/threonine-protein kinase RIO1