HL_6ZXF_021

3D structure

PDB id

6ZXF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUAU

Length

4 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZXF_021 not in the Motif Atlas

Geometric match to HL_8H9D_001

Geometric discrepancy: 0.3371

The information below is about HL_8H9D_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.1

Basepair signature

cWW-F

Number of instances in this motif group

8

Unit IDs

6ZXF|1|2|A|1113
6ZXF|1|2|U|1114
6ZXF|1|2|A|1119
6ZXF|1|2|U|1120

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain B

40S ribosomal protein S3a

Chain b

40S ribosomal protein S27