HL_6ZXF_036

3D structure

PDB id

6ZXF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZXF_036 not in the Motif Atlas

Homologous match to HL_8CRE_210

Geometric discrepancy: 0.3107

The information below is about HL_8CRE_210

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

6ZXF|1|2|A|957
6ZXF|1|2|G|958
6ZXF|1|2|G|959
6ZXF|1|2|U|960
6ZXF|1|2|G|961
6ZXF|1|2|A|962
6ZXF|1|2|A|963
6ZXF|1|2|A|964
6ZXF|1|2|U|965
6ZXF|1|2|U|966

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain O

40S ribosomal protein S14

Chain z

Serine/threonine-protein kinase RIO1