HL_7A01_008

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCCCCCGUGG

Length

10 nucleotides

Bulged bases

7A01|1|K3|C|324

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7A01_008 not in the Motif Atlas

Geometric match to HL_5J7L_149

Geometric discrepancy: 0.3832

The information below is about HL_5J7L_149

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_09452.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

7A01|1|K3|C|321
7A01|1|K3|C|322
7A01|1|K3|C|323
7A01|1|K3|C|324
7A01|1|K3|C|325
7A01|1|K3|C|326
7A01|1|K3|G|327
7A01|1|K3|U|328
7A01|1|K3|G|329
7A01|1|K3|G|330

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain b3

40S ribosomal protein S6