HL_7A01_011

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

7A01|1|K3|A|448, 7A01|1|K3|C|450, 7A01|1|K3|G|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7A01_011 not in the Motif Atlas

Homologous match to HL_4V88_195

Geometric discrepancy: 0.2773

The information below is about HL_4V88_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7A01|1|K3|C|441
7A01|1|K3|C|442
7A01|1|K3|U|443
7A01|1|K3|G|444
7A01|1|K3|A|445
7A01|1|K3|G|446
7A01|1|K3|A|447
7A01|1|K3|A|448
7A01|1|K3|A|449
7A01|1|K3|C|450
7A01|1|K3|G|451
7A01|1|K3|G|452

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain b3

40S ribosomal protein S6

Chain c3

40S ribosomal protein S8

Chain j3

40S ribosomal protein S4,40S ribosomal protein S4