HL_7A01_013

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

7A01|1|K3|A|500, 7A01|1|K3|C|502, 7A01|1|K3|C|503

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7A01_013 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.2172

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

7A01|1|K3|C|498
7A01|1|K3|G|499
7A01|1|K3|A|500
7A01|1|K3|C|501
7A01|1|K3|C|502
7A01|1|K3|C|503
7A01|1|K3|G|504

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain I5

40S ribosomal protein S24

Chain j3

40S ribosomal protein S4,40S ribosomal protein S4