HL_7A01_018
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CCCGAGCCG
- Length
- 9 nucleotides
- Bulged bases
- 7A01|1|K3|G|836, 7A01|1|K3|C|840
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7A01_018 not in the Motif Atlas
- Geometric match to HL_8C3A_022
- Geometric discrepancy: 0.1487
- The information below is about HL_8C3A_022
- Detailed Annotation
- Externally structured
- Broad Annotation
- Externally structured
- Motif group
- HL_96426.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 4
Unit IDs
7A01|1|K3|C|833
7A01|1|K3|C|834
7A01|1|K3|C|835
7A01|1|K3|G|836
7A01|1|K3|A|837
7A01|1|K3|G|838
7A01|1|K3|C|839
7A01|1|K3|C|840
7A01|1|K3|G|841
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain I5
- 40S ribosomal protein S24
- Chain j3
- 40S ribosomal protein S4,40S ribosomal protein S4
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