HL_7A01_020
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7A01_020 not in the Motif Atlas
- Homologous match to HL_4V88_206
- Geometric discrepancy: 0.2848
- The information below is about HL_4V88_206
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
7A01|1|K3|A|957
7A01|1|K3|G|958
7A01|1|K3|G|959
7A01|1|K3|U|960
7A01|1|K3|G|961
7A01|1|K3|A|962
7A01|1|K3|A|963
7A01|1|K3|A|964
7A01|1|K3|U|965
7A01|1|K3|U|966
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain E1
- INTERNAL RIBOSOME ENTRY SITE
- Chain N3
- Ribosomal protein S5
- Chain a5
- Uncharacterized protein
Coloring options: