HL_7A01_028

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAGCGAUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7A01_028 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.3525

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86870.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

7A01|1|K3|G|1352
7A01|1|K3|A|1353
7A01|1|K3|G|1354
7A01|1|K3|C|1355
7A01|1|K3|G|1356
7A01|1|K3|A|1357
7A01|1|K3|U|1358
7A01|1|K3|U|1359

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain D3

40S RIBOSOMAL PROTEIN ES21

Chain U3

40S_SA_C domain-containing protein

Chain W3

S5 DRBM domain-containing protein