HL_7A01_038
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GGAGAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7A01_038 not in the Motif Atlas
- Homologous match to HL_5TBW_186
- Geometric discrepancy: 0.1378
- The information below is about HL_5TBW_186
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
7A01|1|d2|G|86
7A01|1|d2|G|87
7A01|1|d2|A|88
7A01|1|d2|G|89
7A01|1|d2|A|90
7A01|1|d2|C|91
Current chains
- Chain d2
- 5S RIBOSOMAL RNA
Nearby chains
- Chain 62
- 60S RIBOSOMAL PROTEIN EL20
- Chain L2
- Ribosomal protein L10 (Predicted)
- Chain X2
- Ribosomal protein L10 (Predicted)
- Chain e2
- Large subunit ribosomal RNA; LSU rRNA
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