HL_7A01_039
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UAAGCAUA
- Length
- 8 nucleotides
- Bulged bases
- 7A01|1|e2|A|39
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7A01_039 not in the Motif Atlas
- Geometric match to HL_4V9F_006
- Geometric discrepancy: 0.3465
- The information below is about HL_4V9F_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_30068.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
7A01|1|e2|U|37
7A01|1|e2|A|38
7A01|1|e2|A|39
7A01|1|e2|G|40
7A01|1|e2|C|41
7A01|1|e2|A|42
7A01|1|e2|U|43
7A01|1|e2|A|44
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain 12
- Ribosomal protein L15
- Chain F2
- eL42
- Chain a7
- 60S ribosomal protein L13
- Chain q2
- uL15
Coloring options: