HL_7A01_046
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CUUGGGAAUG
- Length
- 10 nucleotides
- Bulged bases
- 7A01|1|e2|G|294, 7A01|1|e2|A|295, 7A01|1|e2|A|296
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7A01_046 not in the Motif Atlas
- Homologous match to HL_8C3A_008
- Geometric discrepancy: 0.1421
- The information below is about HL_8C3A_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_77436.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
7A01|1|e2|C|289
7A01|1|e2|U|290
7A01|1|e2|U|291
7A01|1|e2|G|292
7A01|1|e2|G|293
7A01|1|e2|G|294
7A01|1|e2|A|295
7A01|1|e2|A|296
7A01|1|e2|U|297
7A01|1|e2|G|298
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain 12
- Ribosomal protein L15
- Chain F2
- eL42
- Chain a7
- 60S ribosomal protein L13
- Chain q2
- uL15
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