HL_7A01_063

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

7A01|1|e2|A|1630, 7A01|1|e2|G|1633

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7A01_063 not in the Motif Atlas

Geometric match to HL_5TBW_021

Geometric discrepancy: 0.1719

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7A01|1|e2|G|1627
7A01|1|e2|C|1628
7A01|1|e2|G|1629
7A01|1|e2|A|1630
7A01|1|e2|A|1631
7A01|1|e2|A|1632
7A01|1|e2|G|1633
7A01|1|e2|A|1634
7A01|1|e2|C|1635

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 92

Uncharacterized protein

Chain C2

Ribosomal protein L37