HL_7A01_080

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGGUAACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7A01_080 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.3583

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

7A01|1|e2|C|2577
7A01|1|e2|G|2578
7A01|1|e2|G|2579
7A01|1|e2|U|2580
7A01|1|e2|A|2581
7A01|1|e2|A|2582
7A01|1|e2|C|2583
7A01|1|e2|G|2584

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 22

60S ribosomal protein L27

Chain y2

eL34