HL_7A01_081

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUUCUCUUU

Length

9 nucleotides

Bulged bases

7A01|1|e2|U|2631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7A01_081 not in the Motif Atlas

Homologous match to HL_5TBW_037

Geometric discrepancy: 0.2731

The information below is about HL_5TBW_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7A01|1|e2|G|2624
7A01|1|e2|U|2625
7A01|1|e2|U|2626
7A01|1|e2|C|2627
7A01|1|e2|U|2628
7A01|1|e2|C|2629
7A01|1|e2|U|2630
7A01|1|e2|U|2631
7A01|1|e2|U|2632

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 32

60S RIBOSOMAL PROTEIN EL19

Chain 82

Ribosomal protein L22