HL_7A01_091

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

7A01|1|e2|C|3673

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7A01_091 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.1653

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

7A01|1|e2|C|3668
7A01|1|e2|G|3669
7A01|1|e2|C|3670
7A01|1|e2|G|3671
7A01|1|e2|G|3672
7A01|1|e2|C|3673
7A01|1|e2|G|3674

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 12

Ribosomal protein L15

Chain 92

Uncharacterized protein

Chain V2

60S RIBOSOMAL PROTEIN EL8