HL_7A01_103

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUCAGUACG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7A01_103 not in the Motif Atlas

Homologous match to HL_8C3A_059

Geometric discrepancy: 0.4731

The information below is about HL_8C3A_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34636.1

Basepair signature

cWW-cWW-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7A01|1|e2|U|4301
7A01|1|e2|U|4302
7A01|1|e2|C|4303
7A01|1|e2|A|4304
7A01|1|e2|G|4305
7A01|1|e2|U|4306
7A01|1|e2|A|4307
7A01|1|e2|C|4308
7A01|1|e2|G|4309

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 72

eL21

Chain F2

eL42

Chain S2

60S RIBOSOMAL PROTEIN EL18

Chain q2

uL15

Chain r2

60S ribosomal protein L29