HL_7A01_113

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCGGGACCG

Length

9 nucleotides

Bulged bases

7A01|1|e2|C|4859

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7A01_113 not in the Motif Atlas

Geometric match to HL_6U8D_003

Geometric discrepancy: 0.3568

The information below is about HL_6U8D_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32346.4

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

7A01|1|e2|C|4777
7A01|1|e2|C|4853
7A01|1|e2|G|4854
7A01|1|e2|G|4855
7A01|1|e2|G|4856
7A01|1|e2|A|4857
7A01|1|e2|C|4858
7A01|1|e2|C|4859
7A01|1|e2|G|4860

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 02

Ribosomal protein L14

Chain w2

60S RIBOSOMAL PROTEIN UL13