HL_7A01_114

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAGAGGC

Length

8 nucleotides

Bulged bases

7A01|1|e2|G|4910, 7A01|1|e2|A|4911, 7A01|1|e2|G|4913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7A01_114 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.122

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

7A01|1|e2|G|4907
7A01|1|e2|G|4908
7A01|1|e2|A|4909
7A01|1|e2|G|4910
7A01|1|e2|A|4911
7A01|1|e2|G|4912
7A01|1|e2|G|4913
7A01|1|e2|C|4914

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 52

uL3

Chain w2

60S RIBOSOMAL PROTEIN UL13