HL_7A01_116

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

7A01|1|e2|C|5023, 7A01|1|e2|C|5024, 7A01|1|e2|C|5027

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7A01_116 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2687

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7A01|1|e2|C|5021
7A01|1|e2|U|5022
7A01|1|e2|C|5023
7A01|1|e2|C|5024
7A01|1|e2|C|5025
7A01|1|e2|U|5026
7A01|1|e2|C|5027
7A01|1|e2|G|5028

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain c3

40S ribosomal protein S8