HL_7A01_118
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUGAAUUGCAGGACACAUUGAUC
- Length
- 23 nucleotides
- Bulged bases
- 7A01|1|h2|C|81, 7A01|1|h2|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7A01_118 not in the Motif Atlas
- Homologous match to HL_8C3A_075
- Geometric discrepancy: 0.5967
- The information below is about HL_8C3A_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_07882.1
- Basepair signature
- cWW-F-F-tSH-tHS-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
7A01|1|h2|G|68
7A01|1|h2|U|69
7A01|1|h2|G|70
7A01|1|h2|A|71
7A01|1|h2|A|72
7A01|1|h2|U|73
7A01|1|h2|U|74
7A01|1|h2|G|75
7A01|1|h2|C|76
7A01|1|h2|A|77
7A01|1|h2|G|78
7A01|1|h2|G|79
7A01|1|h2|A|80
7A01|1|h2|C|81
7A01|1|h2|A|82
7A01|1|h2|C|83
7A01|1|h2|A|84
7A01|1|h2|U|85
7A01|1|h2|U|86
7A01|1|h2|G|87
7A01|1|h2|A|88
7A01|1|h2|U|89
7A01|1|h2|C|90
Current chains
- Chain h2
- 5.8S RIBOSOMAL RNA
Nearby chains
- Chain A2
- uL29
- Chain C2
- Ribosomal protein L37
- Chain D2
- ribosomal protein eL39
- Chain e2
- Large subunit ribosomal RNA; LSU rRNA
- Chain o2
- Ribosomal protein L26
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